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;; Ignore bell
(setq ring-bell-function 'ignore)

(setq python-shell-interpreter "~/.micromamba/envs/emacs-py/bin/ipython"
      python-shell-interpreter-args "--pylab")

(defun nm/add-to-pypath (&optional path)
  "# Add to python path"
  (interactive)
  (let* ((fullpath (if path
		       path
		     (ido-read-directory-name "Path: "))))
    (setenv "PYTHONPATH"
	    (let ((current (getenv "PYTHONPATH"))
		  (new fullpath))
	      (if current
		  (concat new ":" current)
		new)))))

(add-to-list 'major-mode-remap-alist '(python-mode . python-ts-mode))

(require 'eglot)
(define-key eglot-mode-map (kbd "C-c l r") 'eglot-rename)
(define-key eglot-mode-map (kbd "C-c l f") 'eglot-format)
(define-key eglot-mode-map (kbd "C-c l d") 'eldoc)

(setq org-format-latex-options (plist-put org-format-latex-options :scale 1.8))
(let ((png (cdr (assoc 'dvipng org-preview-latex-process-alist))))
  (plist-put png :latex-compiler '("latex -interaction nonstopmode -output-directory %o %F"))
  (plist-put png :image-converter '("dvipng -D %D -T tight -o %O %F"))
  (plist-put png :transparent-image-converter '("dvipng -D %D -T tight -bg Transparent -o %O %F")))

(org-babel-do-load-languages
 'org-babel-load-languages
 '((python . t)
   (gnuplot . t)
   (R . t)))
(setq org-babel-python-command python-shell-interpreter)
(setq org-babel-R-command "/usr/local/bin/R --slave --no-save")
(setq org-babel-gnuplot-command "/usr/local/bin/gnuplot")
(setq org-confirm-babel-evaluate nil)

(defun nm/personal/ignore-angle-brackets ()
  "Ignore angle brackets in org mode"
  (modify-syntax-entry ?< ".")
  (modify-syntax-entry ?> "."))
(add-hook 'org-mode-hook 'nm/personal/ignore-angle-brackets)

(add-to-list 'load-path "~/.emacs.d/extras/")
(when (require 'writegood-mode nil t)
  (global-set-key (kbd "C-c g") 'writegood-mode))

(with-eval-after-load 'python
  (defun python-shell-completion-native-try ()
    "Return non-nil if can trigger native completion."
    (let ((python-shell-completion-native-enable t)
          (python-shell-completion-native-output-timeout
           python-shell-completion-native-try-output-timeout))
      (python-shell-completion-native-get-completions
       (get-buffer-process (current-buffer))
       nil "_"))))

(setq sentence-end-double-space nil)

(defun elchemy/read-alist-file (file-path)
  "Read a file where each line is an alist of the form (name . location), returning a list of these pairs."
  (interactive "fEnter file path: ")
  (let (result)
    (with-temp-buffer
      (insert-file-contents file-path)
      (goto-char (point-min))
      (while (not (eobp))
        (let ((line (buffer-substring-no-properties (line-beginning-position) (line-end-position))))
          (when (not (string-blank-p line))
            (let ((pair (car (read-from-string line))))
              (push pair result))))
        (forward-line 1)))
    (reverse result)))
(defun elchemy/create-dashboard ()
  "Create the user dashboard"
  (interactive)
  (let ((buffer (get-buffer-create "*Dashboard*")))
    (switch-to-buffer buffer)
    (unless buffer-read-only
      (when (file-exists-p "~/.elchemy/assets/splash.png")
	(insert-image (create-image "~/.elchemy/assets/splash.png" nil nil :scale 0.5))
	(insert "\n"))
      (let ((start (point)))
	(insert "Elchemy Dashboard")
	(add-text-properties start (point)
			     '(face (:height 4.0))))
      (insert "\n\n")
      (insert
       (buttonize "Open Local TODO" (lambda (x) (find-file "~/org/todo.org"))))
      (insert "    ")
      (insert
       (buttonize "Open Remote TODO" (lambda (x) (find-file "/ssh:onid:todo.org"))))
      (insert "\n")
      (insert
       (buttonize "Open Local Notes" (lambda (x) (find-file "~/org/notes.org"))))
      (insert "   ")
      (insert
       (buttonize "Open Remote Notes" (lambda (x) (find-file "/ssh:onid:knowledge.org"))))
      (insert "\n\n")
      (insert
       (buttonize "Open Terminal (zsh)" (lambda (x) (term "/bin/zsh"))))
      (insert "\n\n")
      (insert
       (buttonize "Open Personal Configuration" (lambda (x) (find-file "~/.elchemy/elchemy-personal.el"))))
      (insert "\n\n")
      (when (file-exists-p "~/.elchemy/projects")
	(let ((start (point)))
	  (insert "Projects")
	  (add-text-properties start (point)
			       '(face (:height 1.5))))
	(insert "\n")
	(mapcar #'(lambda (x) (insert (buttonize (car x) (lambda (y) (find-file (cdr x)))) "\n")) (elchemy/read-alist-file "~/.elchemy/projects"))
        (insert "\n"))
      (let ((start (point)))
	(insert "Command Reference")
	(add-text-properties start (point)
			     '(face (:height 1.5))))
      (insert "\n")
      (insert "C-/       ~ Undo\n")
      (insert "C-x n n   ~ Narrow\n")
      (insert "C-x n w   ~ Widen\n")
      (insert "M-%       ~ Query Replace\n")
      (insert "C-M-s     ~ Regex Search\n")
      (insert "F3        ~ Record Macro\n")
      (insert "F4        ~ Play Macro\n")
      (insert "M-0 F4    ~ Play Macro until failure\n")
      (insert "M-l       ~ Locwercase following word\n")
      (insert "M-u       ~ Uppercase following word\n")
      (insert "M-c       ~ Capitalize following word\n")
      (insert "M-g w     ~ Jump to word\n")
      (insert "M-g l     ~ Jump to line\n")
      (insert "C-x C-l   ~ Lowercase Region\n")
      (insert "C-x C-u   ~ Uppercase Region\n")
      (insert "C-M-n     ~ Move forward one balanced expression\n")
      (insert "C-M-p     ~ Move forward one balanced expression\n")
      (read-only-mode +1))))
(elchemy/create-dashboard)

(add-to-list 'org-agenda-files "/ssh:onid:todo.org")
(add-to-list 'org-capture-templates '("o" "OSU Todo" entry (file+headline "/ssh:onid:todo.org" "Imported")
				      "* TODO %?\n  %i\n  %a\n"))
(add-to-list 'org-capture-templates '("k" "Knowledge Entry" entry (file+headline "/ssh:onid:knowledge.org" "Imported")
				      "* %?\n  %i\n  %a\n"))

(add-hook 'minibuffer-setup-hook
          (lambda ()
            (make-local-variable 'face-remapping-alist)
            (add-to-list 'face-remapping-alist '(default (:background "gray90")))))

(load "extras/guile-interaction.el")
(require 'guile-interaction)

(provide 'elchemy-personal)